select active (resi 78,169,173,194,195)
select active, (resi 78,169,173,194,195)
select sub, resn 2
hide
show sticks, sub
show sticks, active
cmd.disable('sub')
set stick_radius=0.1
set sphere_scale=0.2
util.cbab("sub")
cmd.label('''(name ca+C1*+C1' and (byres(active)))''','''"%s-%s"%(resn,resi)''')
cmd.select('lb',"(3TS1_tyr_tRNA_H`4852)")
h_add lb
select n, lb
cmd.select('rb',"(3TS1_tyr_tRNA_H`4865)")
unbond
h_add lb
cmd.disable('rb')
cmd.enable('rb')
cmd.disable('rb')
cmd.enable('rb')
bond
cmd.delete("pkchain")
cmd.delete("pkfrag2")
cmd.delete("pkfrag1")
cmd.delete("pk2")
cmd.enable('pk1')
cmd.disable('pk1')
cmd.delete("pk1")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`4887))) and not (((3TS1_tyr_tRNA_H`4887)) in (lb)))")
cmd.delete("rb")
cmd.delete("n")
cmd.delete("lb")
cmd.select('lb',"(3TS1_tyr_tRNA_H`4857)")
remove elem h and neighbor lb
h_add lb
cmd.delete("lb")
hide sticks, elem h and neighbor elem c
cmd.select('lb',"(3TS1_tyr_tRNA_H`2622)")
cmd.select('rb',"(3TS1_tyr_tRNA_H`4887)")
dist
cmd.delete("dist01")
cmd.select('lb',"(3TS1_tyr_tRNA_H`4886)")
cmd.select('rb',"(3TS1_tyr_tRNA_H`2622)")
dist
cmd.select('lb',"(3TS1_tyr_tRNA_H`2551)")
cmd.select('rb',"(3TS1_tyr_tRNA_H`4887)")
dist
cmd.select('lb',"(3TS1_tyr_tRNA_H`1171)")
cmd.select('rb',"(3TS1_tyr_tRNA_H`4885)")
dist
cmd.delete("dist04")
cmd.delete("dist02")
cmd.select('lb',"(3TS1_tyr_tRNA_H`4887)")
cmd.select('rb',"(3TS1_tyr_tRNA_H`2622)")
dist
cmd.select('lb',"(3TS1_tyr_tRNA_H`1171)")
cmd.select('rb',"(3TS1_tyr_tRNA_H`4886)")
dist
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`4878))) and not (((3TS1_tyr_tRNA_H`4878)) in (lb)))")
cmd.delete("lb")
cmd.delete("rb")
cmd.select('lb',"(3TS1_tyr_tRNA_H`4878)")
h_add lb
cmd.delete("lb")
cmd.select('lb',"(3TS1_tyr_tRNA_H`2949)")
cmd.select('rb',"(3TS1_tyr_tRNA_H`4888)")
dist
cmd.select('lb',"(3TS1_tyr_tRNA_H`2972)")
cmd.select('rb',"(3TS1_tyr_tRNA_H`4888)")
dist
hide label
show sphere, sub
set sphere_scale=0.15
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`4885))) and not (((3TS1_tyr_tRNA_H`4885)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`4887))) and not (((3TS1_tyr_tRNA_H`4887)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`4886))) and not (((3TS1_tyr_tRNA_H`4886)) in (lb)))")
show sphere, lb
cmd.delete("lb")
cmd.delete("rb")
cmd.select('lb',"(3TS1_tyr_tRNA_H`2972)")
hide sphere, lb
cmd.delete("lb")
cmd.select('lb',"(3TS1_tyr_tRNA_H`4888)")
coloshow sphere, lb
show sphere, lb
cmd.delete("lb")
color gray, active
color salmon, elem o
color marine, elem n
color white, elem h
cmd.select('lb',"(3TS1_tyr_tRNA_H`1174)")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`1173))) and not (((3TS1_tyr_tRNA_H`1173)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`1167))) and not (((3TS1_tyr_tRNA_H`1167)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`1177))) and not (((3TS1_tyr_tRNA_H`1177)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2556))) and not (((3TS1_tyr_tRNA_H`2556)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2542))) and not (((3TS1_tyr_tRNA_H`2542)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2552))) and not (((3TS1_tyr_tRNA_H`2552)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2553))) and not (((3TS1_tyr_tRNA_H`2553)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2629))) and not (((3TS1_tyr_tRNA_H`2629)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2616))) and not (((3TS1_tyr_tRNA_H`2616)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2623))) and not (((3TS1_tyr_tRNA_H`2623)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2624))) and not (((3TS1_tyr_tRNA_H`2624)) in (lb)))")
hide sticks, lb
cmd.delete("lb")
cmd.select('lb',"(3TS1_tyr_tRNA_H`2955)")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2945))) and not (((3TS1_tyr_tRNA_H`2945)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2951))) and not (((3TS1_tyr_tRNA_H`2951)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2952))) and not (((3TS1_tyr_tRNA_H`2952)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2957))) and not (((3TS1_tyr_tRNA_H`2957)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2970))) and not (((3TS1_tyr_tRNA_H`2970)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2964))) and not (((3TS1_tyr_tRNA_H`2964)) in (lb)))")
cmd.select('lb',"( ((lb) or ((3TS1_tyr_tRNA_H`2965))) and not (((3TS1_tyr_tRNA_H`2965)) in (lb)))")
hide sticks, lb
cmd.delete("lb")