select active, (resi 149, 176) select active, (resi 149,176) hide select nad, resi 334 select sub, resi 335 show sticks, active show sticks, nad show sticks, sub cmd.disable('sub') cmd.select('lb',"(1NQO_GAPDH_substrate_mono_H2`2269)") cmd.get_wizard().do_select('''lb''') cmd.select('rb',"(1NQO_GAPDH_substrate_mono_H2`5119)") cmd.get_wizard().do_select('''rb''') unbond h_add sub cmd.delete("rb") cmd.delete("lb") cmd.select('lb',"(1NQO_GAPDH_substrate_mono_H2`5131)") cmd.get_wizard().do_select('''lb''') cmd.select('lb',"( ((lb) or ((1NQO_GAPDH_substrate_mono_H2`5125))) and not (((1NQO_GAPDH_substrate_mono_H2`5125)) in (lb)))") cmd.get_wizard().do_select('''lb''') cmd.select('lb',"( ((lb) or ((1NQO_GAPDH_substrate_mono_H2`5132))) and not (((1NQO_GAPDH_substrate_mono_H2`5132)) in (lb)))") cmd.get_wizard().do_select('''lb''') cmd.select('lb',"( ((lb) or ((1NQO_GAPDH_substrate_mono_H2`5126))) and not (((1NQO_GAPDH_substrate_mono_H2`5126)) in (lb)))") cmd.get_wizard().do_select('''lb''') hide sticks, lb cmd.disable('lb') set stick_radius=0.15 set stick_radius=0.15 show sphere, sub cmd.select('lb',"( ((lb) or ((1NQO_GAPDH_substrate_mono_H2`5128))) and not (((1NQO_GAPDH_substrate_mono_H2`5128)) in (lb)))") cmd.get_wizard().do_select('''lb''') cmd.delete("lb") cmd.select('lb',"(1NQO_GAPDH_substrate_mono_H2`5128)") cmd.get_wizard().do_select('''lb''') cmd.select('lb',"( ((lb) or ((1NQO_GAPDH_substrate_mono_H2`5134))) and not (((1NQO_GAPDH_substrate_mono_H2`5134)) in (lb)))") cmd.get_wizard().do_select('''lb''') cmd.select('lb',"( ((lb) or ((1NQO_GAPDH_substrate_mono_H2`5127))) and not (((1NQO_GAPDH_substrate_mono_H2`5127)) in (lb)))") cmd.get_wizard().do_select('''lb''') cmd.select('lb',"( ((lb) or ((1NQO_GAPDH_substrate_mono_H2`5133))) and not (((1NQO_GAPDH_substrate_mono_H2`5133)) in (lb)))") cmd.get_wizard().do_select('''lb''') cmd.select('lb',"( ((lb) or ((1NQO_GAPDH_substrate_mono_H2`5129))) and not (((1NQO_GAPDH_substrate_mono_H2`5129)) in (lb)))") cmd.get_wizard().do_select('''lb''') cmd.delete("lb") cmd.select('lb',"(1NQO_GAPDH_substrate_mono_H2`5129)") cmd.get_wizard().do_select('''lb''') hide sticks, lb cmd.delete("lb") hide sticks, active and elem h and neighbor elem c color gray, active color amrine, elem n color marine, elem n color white, elem h color salmon, elem o color yellowgreen, sub color slate, nad color salmon, elem o color white, elem h color marine, elem n set_color slate2,[ 0.65, 0.68, 0.97] recolor color slate2, nad color salmon, elem o color marine, elem n h_add nad remove elem h and nad remove elem h and nad remove, elem h and nad remove, elem h and nad remove (elem h and nad) cmd.enable('nad') cmd.disable('nad') cmd.enable('nad') cmd.disable('nad') cmd.remove("(elem h and ((all)))") h_add active hide sticks, elem h and neighbor elem c and active h_add sub cmd.select('lb',"(1NQO_GAPDH_substrate_mono_H2`2580)") cmd.get_wizard().do_select('''lb''') cmd.select('lb',"( ((lb) or ((1NQO_GAPDH_substrate_mono_H2`2577))) and not (((1NQO_GAPDH_substrate_mono_H2`2577)) in (lb)))") cmd.get_wizard().do_select('''lb''') cmd.select('lb',"( ((lb) or ((1NQO_GAPDH_substrate_mono_H2`2582))) and not (((1NQO_GAPDH_substrate_mono_H2`2582)) in (lb)))") cmd.get_wizard().do_select('''lb''') cmd.select('lb',"( ((lb) or ((1NQO_GAPDH_substrate_mono_H2`2583))) and not (((1NQO_GAPDH_substrate_mono_H2`2583)) in (lb)))") cmd.get_wizard().do_select('''lb''') cmd.select('lb',"( ((lb) or ((1NQO_GAPDH_substrate_mono_H2`2576))) and not (((1NQO_GAPDH_substrate_mono_H2`2576)) in (lb)))") cmd.get_wizard().do_select('''lb''') cmd.disable('lb') cmd.enable('lb') cmd.disable('lb') cmd.enable('lb') hide sticks, lb hide sphere, lb cmd.delete("lb") color hotpink, elem p color orange, elem s cmd.select('lb',"(1NQO_GAPDH_substrate_mono_H2`1129)") cmd.get_wizard().do_select('''lb''') hide sticks, lb cmd.delete("lb") cmd.select('lb',"(1NQO_GAPDH_substrate_mono_H2`2548)") cmd.get_wizard().do_select('''lb''') h_add lb cmd.delete("lb") cmd.select('lb',"(1NQO_GAPDH_substrate_mono_H2`2568)") cmd.get_wizard().do_select('''lb''') remove lb cmd.delete("lb") cmd.select('lb',"(1NQO_GAPDH_substrate_mono_H2`2567)") cmd.get_wizard().do_select('''lb''') select h, lb cmd.select('rb',"(1NQO_GAPDH_substrate_mono_H2`2548)") cmd.get_wizard().do_select('''rb''') show sphere, h unbond translate [-0.6,0.2,0], h _ set_view (\ _ 0.686637163, 0.130559847, 0.715228975,\ _ -0.610985398, -0.429558992, 0.664994419,\ _ 0.394064128, -0.893560767, -0.215178713,\ _ 0.002376718, -0.002606346, -36.264564514,\ _ -6.231471062, 45.351028442, 106.932739258,\ _ 5.900000095, 79.641784668, 0.000000000 ) translate [-0.1,0,0], h _ set_view (\ _ 0.686637163, 0.130559847, 0.715228975,\ _ -0.610985398, -0.429558992, 0.664994419,\ _ 0.394064128, -0.893560767, -0.215178713,\ _ 0.002376718, -0.002606346, -36.264564514,\ _ -6.231471062, 45.351028442, 106.932739258,\ _ 5.900000095, 79.641784668, 0.000000000 ) translate [-0.1,0,0], h _ set_view (\ _ 0.686637163, 0.130559847, 0.715228975,\ _ -0.610985398, -0.429558992, 0.664994419,\ _ 0.394064128, -0.893560767, -0.215178713,\ _ 0.002376718, -0.002606346, -36.264564514,\ _ -6.231471062, 45.351028442, 106.932739258,\ _ 5.900000095, 79.641784668, 0.000000000 ) dist translate [-0.05,0.25,0], h _ set_view (\ _ 0.647649348, 0.106056571, 0.754569948,\ _ -0.662015140, -0.411992073, 0.626135528,\ _ 0.377292693, -0.905006409, -0.196610853,\ _ 0.002376718, -0.002606346, -36.264564514,\ _ -6.231471062, 45.351028442, 106.932739258,\ _ 5.900000095, 79.641784668, 0.000000000 ) dist cmd.disable('dist02') cmd.delete("dist03") cmd.delete("dist02") bond cmd.delete("rb") cmd.delete("lb") cmd.select('lb',"(1NQO_GAPDH_substrate_mono_H2`2570)") cmd.get_wizard().do_select('''lb''') cmd.select('rb',"(1NQO_GAPDH_substrate_mono_H2`2586)") cmd.get_wizard().do_select('''rb''') dist cmd.disable('dist04') cmd.enable('dist04') cmd.delete("dist04") cmd.delete("rb") cmd.delete("lb") cmd.delete("pkchain") cmd.delete("pkfrag2") cmd.delete("pkfrag1") cmd.delete("pk2") cmd.delete("pk1") cmd.select('lb',"(1NQO_GAPDH_substrate_mono_H2`2567)") cmd.get_wizard().do_select('''lb''') hide sphere, h cmd.delete("lb") hide label set sphere_scale=0.2