#########################################################################
#                                                                       #
# PyMol Script to render CAP-DNA complex                                #
# Illustration of DNA bending by proteins                               #
#                                                                       #
# Esther Zhuang and Kalju Kahn, UCSB, 2003-2004                         #
#                                                                       #
#########################################################################

hide

# General style
set stick_radius=0.22
set sphere_scale=0.60

# Show DNA as sticks with phosphates as spheres
show sticks, chain c
show sticks, chain d
show sphere, elem p and chain c
show sphere, elem p and chain d

color gray, chain a
color marine, chain b
color wheat, chain c
color wheat, chain d
color orange, elem p

# Show protein and DNA backbone as cartoon 
show cartoon
cartoon automatic
cartoon loop, chain c
cartoon loop, chain d

# Zoom in
set_view (\
    0.856870294,    0.474737495,    0.200997546,\
   -0.252582997,    0.046715591,    0.966448665,\
    0.449417472,   -0.878886700,    0.159940198,\
    0.000038551,    0.000003397, -235.434646606,\
   34.660118103,   55.691024780,   -4.896633148,\
  178.363800049,  309.158416748,    0.000000000 )

util.performance(0)
cmd.set('ray_texture',5)
ray