#########################################################################
#                                                                       #
# PyMol Script to render GC base pair in DNA                            #
#                                                                       #
#                                                                       #
# Esther Zhuang and Kalju Kahn, UCSB, 2003-2004                         #
#                                                                       #
#########################################################################

hide
set dash_radius, 0.1

# Show the GC base pair
select G, resi 10
select C, resi 11
cmd.disable('G')
cmd.disable('C')

show sticks, G
show sticks, C
remove elem h and neighbor elem c

color gray
color salmon, elem o
color marine, elem n
color white, elem h

# Show the hydrogen bonds
dist (G), (C), 2.10
hide label

# Zoom into the base pair
set_view (\
    0.050149482,    0.192700192,    0.979975820,\
    0.007885797,   -0.981256068,    0.192548648,\
    0.998710454,   -0.001928216,   -0.050729193,\
    0.000000495,   -0.000011489,  -55.844570160,\
   19.649290085,   16.258607864,    6.985193253,\
   34.341369629,   83.623100281,    0.000000000 )

util.performance(0)
rebuild
ray